Tuesday, November 10, 2015

New Admixture Test on GEDmatch: PuntDNAL K15


I have seen PuntDNAL for a while, but it seemed to be tailored for those of mostly African ancestry so it didn't seem relevant to my research, but I came across this new one last week.  I ran my parents and me through the calculator, and I am a bit unsure what to make of the results.  I'd say Eurogenes is probably the more accurate test for us from what I know of my parents' ancestry.

The description of the test:
This calculator focuses primarily on Africa (particularly East Africa), West Asia, and Europe. If you are mostly African, West Asian, or European, then you will find it useful and Accurate. It will be periodically updated as new data becomes available. Questions and comments about this calculator should be directed to Abdullahi Warsame.

Thank you to Abdullahi for making this available!



For comparison, this is my father's AncestryDNA admixture estimate:
Native American less than 1%
Great Britain 62%
Scandinavia 33%
Ireland 2%
Europe West 2%


Admix Results (sorted):

# Population Percent
1 NE_European 55.86
2 Mediterranean 29.8
3 Caucasian 8.51
4 Beringian         1.94
5 SW_Asian 1.85
6 S_Indian         0.88
7 W_African 0.86
8 Amerindian 0.24
9 Omo_River 0.05
10 Siberian         0.01

Single Population Sharing:

# Population (source) Distance
1 English 2.39
2 Orcadian 2.52
3 Irish         2.99
4 Scottish 3.28
5 North_German 3.67
6 Utahn_White 4.11
7 Norwegian 4.43
8 Austrian         4.54
9 South_German 4.58
10 Slovenian         4.88
11 Hungarian 5.17
12 Croatian         6.28
13 Swedish         6.88
14 French         7.82
15 Serbian         9.61
16 Polish        10.24
17 Bosnian        14.19
18 Macedonian 15.2
19 Romanian 16.25
20 Belarusian 16.72

Mixed Mode Population Sharing:

# Primary Population (source) Secondary Population (source) Distance
1 96.9% English + 3.1% West_Greenlander @ 0.95
2 98.1% English + 1.9% East_Greenlander @ 0.97
3 98.1% Orcadian + 1.9% East_Greenlander @ 1.39
4 97% Orcadian + 3% West_Greenlander @ 1.44
5 97.6% Scottish + 2.4% East_Greenlander @ 1.73
6 96.2% Scottish + 3.8% West_Greenlander @ 1.9
7 98.3% English + 1.7% Koryak @ 1.99
8 98.6% English + 1.4% African_American @ 2.01
9 98.8% English + 1.2% Igbo @ 2.02
10 98.7% English + 1.3% Bamoun @ 2.02
11 98.8% English + 1.2% Bambaran @ 2.02
12 98.8% English + 1.2% Hausa @ 2.02
13 98.8% English + 1.2% Brong @ 2.02
14 98.7% English + 1.3% NE_Bantu @ 2.02
15 98.8% English + 1.2% Mandinka @ 2.03
16 51% Norwegian + 49% South_German @ 2.03
17 98.6% English + 1.4% Luhya @ 2.03
18 98.9% English + 1.1% Yoruban @ 2.03
19 98.7% English + 1.3% SA_Bantu @ 2.03
20 98.6% English + 1.4% Xhosa @ 2.04


Admix Results (sorted):

# Population Percent
1 NE_European 55.86
2 Mediterranean 29.80
3 Caucasian 8.51
4 Beringian         1.94
5 SW_Asian 1.85


Finished reading population data. 157 populations found.
15 components mode.

--------------------------------

Least-squares method.

Using 1 population approximation:
1 English @ 2.276304
2 Orcadian @ 2.459624
3 Irish @ 3.017227
4 Scottish @ 3.364615
5 North_German @ 3.864859
6 Utahn_White @ 4.328273
7 Austrian @ 4.772326
8 Norwegian @ 4.782928
9 South_German @ 4.904590
10 Slovenian @ 5.199419
11 Hungarian @ 5.541170
12 Croatian @ 6.847998
13 Swedish @ 7.499986
14 French @ 8.523516
15 Serbian @ 10.631078
16 Polish @ 11.224601
17 Bosnian @ 15.741078
18 Macedonian @ 16.862701
19 Romanian @ 18.006475
20 Russian @ 18.122931

Using 2 populations approximation:
1 50% Norwegian +50% South_German @ 1.913835


Using 3 populations approximation:
1 50% Norwegian +25% Irish +25% French @ 1.906923


Using 4 populations approximation:
1 Norwegian + Norwegian + Irish + French @ 1.906923
2 Norwegian + Norwegian + South_German + South_German @ 1.913835
3 Norwegian + North_German + Orcadian + French @ 1.932284
4 Polish + Norwegian + French + French @ 1.936818
5 Norwegian + North_German + English + French @ 1.954294
6 Norwegian + Norwegian + Utahn_White + South_German @ 1.964432
7 Norwegian + North_German + South_German + South_German @ 1.972860
8 Norwegian + North_German + Irish + French @ 1.987115
9 Swedish + Norwegian + South_German + French @ 1.990007
10 Norwegian + Norwegian + Orcadian + French @ 1.991178
11 Norwegian + North_German + Utahn_White + South_German @ 1.992937
12 Norwegian + Norwegian + Hungarian + French @ 1.998845
13 Norwegian + Norwegian + Austrian + French @ 2.004083
14 Norwegian + North_German + North_German + French @ 2.004564
15 Polish + Swedish + French + French @ 2.007750
16 Belarusian + English + French + French @ 2.008666
17 Norwegian + Norwegian + Slovenian + French @ 2.008670
18 Polish + North_German + South_German + French @ 2.012599
19 Norwegian + Scottish + Slovenian + French @ 2.013311
20 Norwegian + Norwegian + English + French @ 2.014159



For comparison, this is my mother's AncestryDNA admixture estimate:
Great Britain 65%
Iberian Peninsula         10%
Europe West 8%
Ireland 7%
Scandinavia 7%
Caucasus          3%



Admix Results (sorted):

# Population Percent
1 NE_European 52.29
2 Mediterranean 30.92
3 Caucasian 10.74
4 SW_Asian 2.34
5 S_Indian         1.06
6 Omo_River 0.92
7 Beringian         0.8
8 Horn_Of_Africa 0.52
9 Amerindian 0.17
10 Oceanian         0.14
11 S_African 0.08
12 Wht_Nile_River 0.02

Single Population Sharing:

# Population (source) Distance
1 South_German 2.05
2 Utahn_White 2.33
3 Irish 4.3
4 English 4.53
5 French 4.72
6 Croatian 4.83
7 Orcadian 5
8 Hungarian 5.22
9 Austrian 5.45
10 Serbian 5.79
11 Slovenian 5.82
12 Scottish 6.26
13 North_German 6.59
14 Norwegian 7.95
15 Swedish 10.34
16 Bosnian 10.51
17 Macedonian 11.23
18 Romanian 12.26
19 Bulgarian 12.98
20 Polish 13.6

Mixed Mode Population Sharing:

# Primary Population (source) Secondary Population (source) Distance
1 55.5% French + 44.5% Slovenian @ 1.15
2 73.7% South_German + 26.3% Croatian @ 1.18
3 52.7% French + 47.3% Hungarian @ 1.24
4 72% North_German + 28% Italian @ 1.32
5 72.1% English + 27.9% Macedonian @ 1.35
6 67.9% Scottish + 32.1% Bulgarian @ 1.36
7 75.4% Norwegian + 24.6% Tuscan @ 1.36
8 96.1% Utahn_White + 3.9% Tadjik @ 1.4
9 77.1% South_German + 22.9% Hungarian @ 1.4
10 75% English + 25% Bulgarian @ 1.41
11 64.6% Scottish + 35.4% Macedonian @ 1.42
12 92.6% English + 7.4% Assyrian @ 1.44
13 85.1% English + 14.9% Greek_Central @ 1.45
14 60.9% Norwegian + 39.1% Romanian @ 1.46
15 97.3% Utahn_White + 2.7% Makrani @ 1.46
16 91.6% English + 8.4% Turk_Kayseri @ 1.47
17 83.7% English + 16.3% Greek_Thessaly @ 1.47
18 72.9% Orcadian + 27.1% Bulgarian @ 1.47
19 97.4% Utahn_White + 2.6% Brahui @ 1.47
20 66.7% Scottish + 33.3% Romanian @ 1.48



Admix Results (sorted):

# Population Percent
1 NE_European 52.29
2 Mediterranean 30.92
3 Caucasian 10.74
4 SW_Asian 2.34
5 S_Indian         1.06


Finished reading population data. 157 populations found.
15 components mode.

--------------------------------

Least-squares method.

Using 1 population approximation:
1 South_German @ 2.128099
2 Utahn_White @ 2.460671
3 Irish @ 4.703682
4 English @ 4.990640
5 French @ 5.126281
6 Croatian @ 5.222383
7 Orcadian @ 5.522955
8 Hungarian @ 5.645545
9 Austrian @ 5.921393
10 Slovenian @ 6.341358
11 Serbian @ 6.418254
12 Scottish @ 6.928301
13 North_German @ 7.258951
14 Norwegian @ 8.806544
15 Swedish @ 11.442522
16 Bosnian @ 11.654517
17 Macedonian @ 12.465020
18 Romanian @ 13.596674
19 Bulgarian @ 14.398587
20 Polish @ 15.026039

Using 2 populations approximation:
1 50% Hungarian +50% French @ 1.217426


Using 3 populations approximation:
1 50% North_German +25% French +25% Macedonian @ 1.153106


Using 4 populations approximation:
1 Orcadian + South_German + South_German + Serbian @ 0.999414
2 North_German + South_German + French + Serbian @ 1.022581
3 North_German + Utahn_White + French + Serbian @ 1.057597
4 Norwegian + North_German + French + Macedonian @ 1.069893
5 English + South_German + South_German + Serbian @ 1.084497
6 North_German + Croatian + French + French @ 1.090698
7 Irish + Croatian + French + French @ 1.102772
8 Croatian + South_German + South_German + South_German @ 1.120867
9 Irish + South_German + South_German + Serbian @ 1.121346
10 Swedish + Irish + French + Macedonian @ 1.123925
11 Slovenian + Croatian + French + French @ 1.130654
12 Orcadian + Irish + French + Serbian @ 1.131846
13 Irish + Croatian + South_German + French @ 1.132046
14 English + Irish + French + Serbian @ 1.135169
15 Slovenian + Hungarian + French + French @ 1.137533
16 North_German + South_German + South_German + Serbian @ 1.142156
17 Orcadian + Utahn_White + South_German + Serbian @ 1.142925
18 Norwegian + Irish + South_German + Romanian @ 1.144317
19 Scottish + North_German + South_German + Bulgarian @ 1.145327
20 Norwegian + South_German + French + Serbian @ 1.150340



For comparison, this is my AncestryDNA admixture estimate:
Great Britain 71%
Scandinavia 17%
Europe West 9%
Europe East          less than 1%
Ireland less than 1%
Caucasus         less than 1%



Admix Results (sorted):

# Population Percent
1 NE_European 53.48
2 Mediterranean 30.74
3 Caucasian 10.28
4 SW_Asian 1.5
5 Beringian         1.44
6 S_Indian         1.11
7 S_African 0.96
8 Omo_River 0.26
9 Siberian         0.1
10 Oceanian         0.08
11 Amerindian 0.06

Single Population Sharing:

# Population (source) Distance
1 Utahn_White 2.59
2 South_German 2.69
3 Irish 3.66
4 English 3.74
5 Orcadian 4.26
6 Hungarian 5.21
7 Scottish 5.29
8 Austrian 5.31
9 Croatian 5.33
10 Slovenian 5.52
11 French 5.63
12 North_German 5.68
13 Norwegian 6.94
14 Serbian 7.14
15 Swedish 9.34
16 Bosnian 11.81
17 Macedonian 12.61
18 Polish 12.67
19 Romanian 13.65
20 Bulgarian 14.36

Mixed Mode Population Sharing:

# Primary Population (source) Secondary Population (source) Distance
1 97.6% Utahn_White + 2.4% West_Greenlander @ 1.97
2 74.2% South_German + 25.8% Slovenian @ 2
3 63.2% Irish + 36.8% French @ 2.01
4 63.4% South_German + 36.6% Irish @ 2.03
5 98.6% Utahn_White + 1.4% East_Greenlander @ 2.03
6 73.4% South_German + 26.6% Hungarian @ 2.05
7 91.7% South_German + 8.3% Russian @ 2.08
8 75.6% Utahn_White + 24.4% Hungarian @ 2.08
9 92% South_German + 8% Karelian @ 2.08
10 75.7% South_German + 24.3% North_German @ 2.09
11 93.9% English + 6.1% Turk_Kayseri @ 2.1
12 94.4% English + 5.6% Turk_Istanbul @ 2.1
13 92% South_German + 8% Belarusian @ 2.13
14 76.9% Utahn_White + 23.1% Croatian @ 2.14
15 94.9% English + 5.1% Turk_Trabzon @ 2.14
16 94.6% English + 5.4% Azerbaijani @ 2.14
17 92.8% South_German + 7.2% Finnish @ 2.14
18 50.2% French + 49.8% North_German @ 2.15
19 50.6% Slovenian + 49.4% French @ 2.15
20 77.9% Utahn_White + 22.1% Slovenian @ 2.15



Admix Results (sorted):

# Population Percent
1 NE_European 53.48
2 Mediterranean 30.74
3 Caucasian 10.28
4 SW_Asian 1.50
5 Beringian         1.44
6 S_Indian         1.11


Finished reading population data. 157 populations found.
15 components mode.

--------------------------------

Least-squares method.

Using 1 population approximation:
1 Utahn_White @ 2.567060
2 South_German @ 2.729956
3 Irish @ 3.845506
4 English @ 3.982403
5 Orcadian @ 4.574748
6 Hungarian @ 5.549877
7 Austrian @ 5.658752
8 Croatian @ 5.715500
9 Scottish @ 5.735458
10 Slovenian @ 5.910424
11 French @ 6.083564
12 North_German @ 6.156975
13 Norwegian @ 7.626692
14 Serbian @ 7.838583
15 Swedish @ 10.276428
16 Bosnian @ 13.063908
17 Polish @ 13.941177
18 Macedonian @ 13.961777
19 Romanian @ 15.095651
20 Bulgarian @ 15.898861

Using 2 populations approximation:
1 50% Irish +50% South_German @ 2.045060


Using 3 populations approximation:
1 50% Scottish +25% French +25% Serbian @ 1.847615


Using 4 populations approximation:
1 Scottish + North_German + French + Serbian @ 1.779079
2 North_German + Slovenian + French + French @ 1.794362
3 Norwegian + English + French + Serbian @ 1.805328
4 Swedish + Croatian + French + French @ 1.818229
5 North_German + Croatian + South_German + French @ 1.820063
6 Irish + Slovenian + South_German + French @ 1.821359
7 Scottish + Croatian + South_German + French @ 1.822314
8 Norwegian + Irish + French + Serbian @ 1.823437
9 Norwegian + Scottish + French + Serbian @ 1.823824
10 Norwegian + Utahn_White + South_German + Serbian @ 1.824926
11 Norwegian + Croatian + South_German + French @ 1.831322
12 North_German + Utahn_White + Croatian + French @ 1.833168
13 Irish + Hungarian + Utahn_White + French @ 1.836367
14 Norwegian + Utahn_White + Utahn_White + Serbian @ 1.840035
15 Swedish + Utahn_White + French + Serbian @ 1.840461
16 Scottish + Utahn_White + Croatian + French @ 1.844574
17 Scottish + Scottish + French + Serbian @ 1.847615
18 Norwegian + Orcadian + French + Serbian @ 1.850348
19 Scottish + Hungarian + South_German + French @ 1.850951
20 Irish + Hungarian + South_German + French @ 1.852806




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